Ponds in agricultural landscapes are often used by amphibians as breeding habitat. However, the characteristics of agricultural ponds and especially the surrounding area are usually said to be suboptimal for many amphibian species. Using suboptimal habitats might allow a species’ survival and reproduction, but can have negative consequences at the individual and population level. In the present study, we investigated Palmate Newt (Lissotriton helveticus) populations from an intensive wine-growing region in southern Germany and compared them with populations located in a nearby forested area in terms of biometric traits, age and genetic structure. By analyzing over 900 adult newts from 11 ponds, we could show that newts reproducing in forest ponds were larger than newts reproducing in agricultural ponds. We did not find differences in the newt age and growth rate between habitat types. Therefore, differences in the body size of newts might already existed in larvae and/or juveniles, what might be related to a lower habitat quality for larvae and/or juveniles in the agricultural landscape. Body mass, body condition and sexual dimorphic traits (length of the caudal filament and max. height of the tail) correlated with body size, but no additional effect of the habitat type was found. The analysis of microsatellites revealed a higher genetic diversity in forest ponds. However, no clear sign of inbreeding was observed in any agricultural population, suggesting some degree of gene flow between them. We conclude, that agricultural ponds can be suitable habitats for the Palmate Newt and that conservation effort should aim to preserve them. The observed effects on body size indicate the need to increase the quality of the aquatic and terrestrial habitat for early life stages of this newt species in agricultural landscapes.

Stream ecosystems are one of the most threatened ecosystems worldwide due to their exposure to diverse anthropogenic stressors. Pesticides appear to be the most relevant stressor for agricultural streams. Due to the current mismatch of modelled and measured pesticide concentrations, monitoring is necessary to inform risk assessment or improve future pesticide approvals. Knowing if biotic stress responses are similar across large scales and long time frames could ultimately help in estimating protective stressor thresholds. This thesis starts with an overview of entry pathways of pesticides to streams as well as the framework of current pesticide monitoring and gives an outline of the objectives of the thesis. In chapter 2, routine monitoring data based on grab sampling from several countries is analysed to identify the most frequently occurring pesticide mixtures. These mixtures are comprised of relatively low numbers of pesticides, of which herbicides are dominating. The detected pesticide mixtures differ between regions and countries, due to differences in the spectrum of analysed compounds and limits of quantification. Current routine monitoring does not include sampling during pesticide peaks associated with heavy rainfall events which likely influences the detected pesticide mixtures. In chapter 3, sampling rates of 42 organic pesticides for passive sampling are provided together with recommendations for the monitoring of field-relevant peaks. Using this information, in chapter 4 a pesticide gradient is established in an Eastern European region where agricultural intensity adjacent to sampled streams ranges from low to high. In contrast to current routine monitoring, rainfall events were sampled and a magnitude of pesticides were analysed. This led to the simultaneous detection of numerous pesticides of which one to three drive the pesticide toxicity. The toxicity, however, showed no relationship to the agricultural intensity. Using microcosms, the stress responses of fungal communities, the hyphomycetes, and the related ecosystem function of leaf decomposition, is investigated in chapter 5. Effects of a field-relevant fungicide mixture are examined across three biogeographical regions for three consecutive cycles of microbial leaf colonisation and decomposition. Despite different initial communities, stress responses as well as recoveries were similar across biogeographical regions, indicating a general pattern. Overall, this thesis contributes to an improved understanding of occurrence and concentrations of pesticides mixtures in streams, their monitoring and impact on an ecosystem function. We showed that estimated pesticide toxicities reach levels that affect non-target organisms and thereby potentially whole ecosystems. Routine monitoring, however, likely underestimates the threat by pesticides. Effects leading to a loss in biodiversity or functions in streams ecosystems can be reduced by reassessing approved pesticides with ongoing targeted monitoring and increased knowledge of effects caused by these pesticides.

The physical-biological interactions that affect the temporal variability of benthic oxygen fluxes were investigated to gain improved understanding of the factors that control these processes. This study, for the first time is able to resolve benthic diffusive boundary layer (DBL) dynamics using the newly developed lifetime-based laser induced fluorescence (τLIF) oxygen imaging system, which enables study of the role of small-scale fluid mechanics generated by benthic organism activity, and hence a more detailed analysis of oxygen transport mechanisms across the sediment-water interface (SWI). The net benthic oxygen flux across the sediment-water interface is controlled by sediment oxygen uptake and oxygen transport. While the oxygen transport is largely influenced by turbulence driven by large-scale flows, sediment oxygen uptake is mainly affected by oxygen production and biological- and chemical-oxygen degradation of organic matter. Both processes can be enhanced by the presence of fauna and are intimately coupled. The benthic oxygen flux can be influenced by fauna in two ways, i.e. by modulating the availability of oxygen, which enhances the sediment oxygen uptake, and by enhancing the transport of oxygen. In-situ and a series of laboratory measurements were conducted to estimate the short- and seasonal variability of benthic fluxes including the effects of burrow ventilation activity by tube-dwelling animals using eddy correlation (EC) and τLIF oxygen imaging techniques, respectively. The in-situ benthic oxygen fluxes showed high variability at hourly and seasonal timescales, where statistical analysis indicated that current velocity and water depth were the most significant predictors of benthic oxygen flux at the waterside, which co-varied with the discharge, temperature, and oxygen concentration. The range of variability of seasonal fluxes corresponded to the friction velocities which were driven by large-scale flows. Application of a simplified analytical model that couples the effect of hydrodynamic forcing of the diffusive boundary layer with a temperature-dependent oxygen consumption rate within the sediment showed that friction velocity and temperature cause similar variability of the steady-state benthic oxygen flux. The application of τLIF oxygen imaging system in bioturbation experiments enabled the investigation and discovery of insights into oxygen transport mechanisms across the sediment-water interface. Distinct oxygen structures above burrow openings were revealed, these were associated with burrow ventilation. The DBL was degraded in the presence of burrow ventilation. Advective transport generated by the energetic plumes released at burrow outlets was the dominant transport driving mechanism. The contribution of diffusive flux to the total estimated decreased with increasing larval density. For a range of larvae densities, commonly observed in ponds and lakes, sediment oxygen uptake rates increased up to 2.5-fold in the presence of tube-dwelling animals, and the oxygen transport rate exceeded chironomid respiration by up to a factor of 4. The coupled physical-biological factors affecting net benthic oxygen flux can be represented by temperature, which is a prominent factor that accounts for both oxygen transport and sediment oxygen uptake. Low oxygen transport by flow coincided with high summer temperatures, amplified by a reduction of benthic population density and pupation. It can also, however, be offset by increased ventilation activity. In contrast, low temperature coincided with high oxygen concentrations, an abundance of larvae, and higher flow is offset by less burrow ventilation activity. Investigation of the effect of hydrodynamics on oxygen transport alone suggested that the expected increase of benthic oxygen flux under global warming can be offset by a reduction in flow velocity, which could ultimately lead to increasing carbon burial rates, and in a growing importance of anaerobic mineralization pathways with increasing emission rates of methane. This study suggests a significant contribution of biological induced benthic oxygen flux to physical transport driven by large-scale flow-fields contributing to bottom-boundary layer turbulence.